Author Archives: jkh6

DSP group members travelled en masse to Stockholm, Sweden to present seven regular papers at the International Conference on Machine Learning in July 2018:

In addition, DSP group members presented three workshop papers:

Rice DSP alum Rebecca Willett (PhD 2005) is joining the University of Chicago as a Professor of Computer Science and Statistics, where she will be developing a new machine learning initiative.  Her research interests include machine learning, network science, medical imaging, wireless sensor networks, astronomy, and social networks.  She has also held positions at the University of Wisconsin-Madison and Duke University.  Rebecca has received the NSF CAREER Award and AFOSR YIP, and has served as a member of the DARPA Computer Science Study Group.

C. A. Metzler, A. Mousavi, R. Heckel, and R. G. Baraniuk, “Unsupervised Learning with Stein’s Unbiased Risk Estimator,”, June 2018.

Learning from unlabeled and noisy data is one of the grand challenges of machine learning. As such, it has seen a flurry of research with new ideas proposed continuously. In this work, we revisit a classical idea: Stein's Unbiased Risk Estimator (SURE). We show that, in the context of image recovery, SURE and its generalizations can be used to train convolutional neural networks (CNNs) for a range of image denoising and recovery problems without any ground truth data.  Specifically, our goal is to  reconstruct an image x from a noisy linear transformation (measurement) of the image. We consider two scenarios: one where no additional data is available and one where we have measurements of other images that are drawn from the same noisy distribution as x, but have no access to the clean images. Such is the case, for instance, in the context of medical imaging, microscopy, and astronomy, where noise-less ground truth data is rarely available.  We show that in this situation, SURE can be used to estimate the mean-squared-error loss associated with an estimate of x. Using this estimate of the loss, we train networks to perform denoising and compressed sensing recovery. In addition, we also use the SURE framework to partially explain and improve upon an intriguing results presented by Ulyanov et al. in "Deep Image Prior": that a network initialized with random weights and fit to a single noisy image can effectively denoise that image.

Appearing on NSF's Science360 News:  Taking a closer look with a lens-free fluorescent microscope

J. K. Adams, V. Boominathan, B. W. Avants, D. G. Vercosa, F. Ye, R. G. Baraniuk, J. T. Robinson, A. Veeraraghavan, “Single-Frame 3D Fluorescence Microscopy with Ultraminiature Lensless FlatScope,” Science Advances, Vol. 3, No. 12, 8 December 2017.

Abstract: Modern biology increasingly relies on fluorescence microscopy, which is driving demand for smaller, lighter, and cheaper microscopes. However, traditional microscope architectures suffer from a fundamental trade-off: As lenses become smaller, they must either collect less light or image a smaller field of view. To break this fundamental trade-off between device size and performance, we present a new concept for three-dimensional (3D) fluorescence imaging that replaces lenses with an optimized amplitude mask placed a few hundred micrometers above the sensor and an efficient algorithm that can convert a single frame of captured sensor data into high-resolution 3D images. The result is FlatScope: perhaps the world’s tiniest and lightest microscope. FlatScope is a lensless microscope that is scarcely larger than an image sensor (roughly 0.2 g in weight and less than 1 mm thick) and yet able to produce micrometer-resolution, high–frame rate, 3D fluorescence movies covering a total volume of several cubic millimeters. The ability of FlatScope to reconstruct full 3D images from a single frame of captured sensor data allows us to image 3D volumes roughly 40,000 times faster than a laser scanning confocal microscope while providing comparable resolution. We envision that this new flat fluorescence microscopy paradigm will lead to implantable endoscopes that minimize tissue damage, arrays of imagers that cover large areas, and bendable, flexible microscopes that conform to complex topographies.

Fig. 1.  Traditional microscope versus FlatScope. (A) Traditional microscopes capture the scene through an objective and tube lens (~20 to 460 mm), resulting in a quality image directly on the imaging sensor. (B) FlatScope captures the scene through an amplitude mask and spacer (~0.2 mm) and computationally reconstructs the image. Scale bars, 100 μm (inset, 50 μm). (C) Comparison of form factor and resolution for traditional lensed research microscopes, GRIN lens microscope, and FlatScope. FlatScope achieves high-resolution imaging while maintaining a large ratio of FOV relative to the cross-sectional area of the device (see Materials and Methods for elaboration). Microscope objectives are Olympus MPlanFL N (1.25×/2.5×/5×, NA = 0.04/0.08/0.15), Nikon Apochromat (1×/2×/4×, NA = 0.04/0.1/0.2), and Zeiss Fluar (2.5×/5×, NA = 0.12/0.25). (D) FlatScope prototype (shown without absorptive filter). Scale bars, 100 μm.

Rice DSP PhD Andrew Lan (PhD, 2016) has accepted an Assistant Professor position at UMass Amherst in the Department of Computer Science.  He has spent the past two years as a postdoc at Princeton University and OpenStax. His research interests revolve around the development of human-in-the-loop machine learning methods that enable scalable, effective, and fail-safe personalized learning in education. Andrew joins DSP PhD alum Marco Duarte at UMass.


Rice DSP postdoc Gautam Dasarathy has accepted an Assistant Professor position at Arizona State University in the Department of Electrical and Computer Engineering. His research interests lie at the intersection of machine learning, signal processing, statistics, and information theory. He is particularly interested in the integrated design of learning algorithms and data acquisition systems (e.g., active learning) that involve both machine and human components.

Dr. Akane Sano from the MIT Media Lab will be joining the Rice ECE department in Fall 2018 as an Assistant Professor. She is currently a Research Scientist in the Affective Computing Group at MIT and a visiting scientist/lecturer in the People-Aware Computing Lab at Cornell University. Her research develops new technologies to measure, forecast, understand and improve health and wellbeing using multi-modal wearable and mobile human sensing, data analysis/modeling and application development. She has focused on measuring and predicting stress, mental health, and sleep performance for the purpose of improving overall wellbeing.

Dr. Yingyan Lin will join the Rice ECE department as an Assistant Professor in Fall 2018. She is currently the Texas Instruments Visiting Assistant Professor at Rice. Her research interests are in the areas of energy-efficient machine learning systems for cloud and mobile computing, analog and mixed-signal circuits, error resiliency techniques, and VLSI circuits and architectures for machine learning systems on resource-constrained platforms. She received her PhD in 2017 from the University of Illinois at Urbana-Champaign.

Dr. Santiago Segarra from the MIT Institute for Data, Systems, and Society will join the Rice ECE department in Fall 2018 as an Assistant Professor. His research interests include network theory, data science, machine learning, and graph signal processing. His research focuses in networks, ubiquitous data structures that relate to numerous fields, including engineering, economics, sociology, and medicine. Santiago earned his PhD from the University of Pennsylvania in 2016.